Hello Marcelo Caleda,
Thank you for posting. There's no need to worry. Prefetch rebuilds itself over time and usage. You should see the prefetch folder have files added to it as you use your computer and open and run more programs. It should be back to normal in about a week as long as it doesn't get deleted again. You might want to check to see if you have any 3rd party programs that might be deleting the prefetch folder's files if you didn't manually delete them.
Please let me know if this helps you.
Zack
Microsoft Answers Support Engineer
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